Geet Duggal
LinkedIn Profile · vimrc · settings.json · The revenge of the home page
2024-12-02 | |
2024-11-19 | Linear > JIRA for most project management needs: opinionated and smooth. |
2024-11-19 | Tools du jour: Rainbow CSV for VS Code, Ultimate Todoist Sync for Obsidian. FTW |
2024-10-27 | 🎃 Halloween at Hogwarts |
2024-10-14 | Fourth post on 'Tech Habits' live! |
2024-10-08 | AI-assisted programming is hot: Lex Fridman has an interesting podcast with the Cursor folks and OpenAI just released ChatGPT Canvas |
2024-10-05 | Third post on 'Tech Habits' live! |
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Articles
Academic
Patro, Rob; Duggal, G; Love, MI; Irizarry, RA; Kingsford, C; Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference Nature Methods 14 417 2017 (pdf) |
Sefer, Emre; Duggal, Geet; Kingsford, Carl; Deconvolution of ensemble chromatin interaction data reveals the latent mixing structures in cell subpopulations Journal of Computational Biology 23 6 425-438 2016 Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA (pdf) |
Filippova, Darya *; Patro, Rob *; Duggal, Geet *; Kingsford, Carl; Identification of alternative topological domains in chromatin Algorithms for Molecular Biology 9 1-11 2014 BioMed Central (pdf) |
Wang, Hao; Duggal, Geet; Patro, Rob; Girvan, Michelle; Hannenhalli, Sridhar; Kingsford, Carl; Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics 306-315 2013 (pdf) |
Duggal, Geet; Wang, Hao; Kingsford, Carl; Higher-order chromatin domains link eQTLs with the expression of far-away genes Nucleic acids research 42 1 87-96 2014 Oxford University Press (pdf) |
Filippova, Darya; Duggal, Geet; Patro, Rob; Kingsford, Carl; Chromovis: Feature-rich layouts of chromosome conformation graphs Unpublished manuscript at http://www. cs. cmu. edu/~ dfilippo/projects/chromovis/chromovisGD2013. pdf (last accessed 9/21/2017) 15 2013 (pdf) |
Duggal, Geet; Patro, Rob; Sefer, Emre; Wang, Hao; Filippova, Darya; Khuller, Samir; Kingsford, Carl; Resolving spatial inconsistencies in chromosome conformation measurements Algorithms for Molecular Biology 8 1-10 2013 BioMed Central (pdf) |
Duggal, Geet; Kingsford, Carl; Graph rigidity reveals well-constrained regions of chromosome conformation embeddings BMC bioinformatics 13 1-13 2012 BioMed Central (pdf) |
Patro, Robert *; Duggal, Geet *; Sefer, Emre; Wang, Hao; Filippova, Darya; Kingsford, Carl; The missing models: A data-driven approach for learning how networks grow Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining 42-50 2012 (pdf) |
Ku, Wai Lim; Duggal, Geet; Li, Yuan; Girvan, Michelle; Ott, Edward; Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs PloS one 7 2 e31969 2012 Public Library of Science San Francisco, USA (pdf) |
Duggal, Geet *; Navlakha, Saket *; Girvan, Michelle; Kingsford, Carl; Uncovering many views of biological networks using ensembles of near-optimal partitions Proceedings of the 1st International Workshop on Discovering, Summarizing and Using Multiple Clusterings (KDD MultiClust) 9 9 2010 Washington DC (pdf) |
* indicates equal contribution. Profile on Google Scholar.