Geet Duggal

LinkedIn Profile · vimrc · settings.json · The revenge of the home page

2024-12-02
2024-11-19Linear > JIRA for most project management needs: opinionated and smooth.
2024-11-19Tools du jour: Rainbow CSV for VS Code, Ultimate Todoist Sync for Obsidian. FTW
2024-10-27🎃 Halloween at Hogwarts
2024-10-14Fourth post on 'Tech Habits' live!
2024-10-08AI-assisted programming is hot: Lex Fridman has an interesting podcast with the Cursor folks and OpenAI just released ChatGPT Canvas
2024-10-05Third post on 'Tech Habits' live!

See all Geets with ability to permalink on Github.

Articles

2024-12-02Tech Habits: Project Management Using a CSV File vs. Obsidian Kanban
2024-10-14Tech Habits: The Problem with Task Batching
2024-10-06Tech Habits: Managing Project Lists in Plain Text Files and Obsidian
2024-09-22Tech Habits: Capture Everything in One Place?
2024-09-06Tech Habits: Obsidian Live Preview, Vi Focus Mode, & Alarms for Calendar Events
2024-08-27Weather Resistant Productivity
2024-07-30OAuth (An Example PKE Article)
2024-07-24Want Extraordinarily Useful and Timeless Notes? Build a Personal Knowledge Encyclopedia.
2024-07-01A “No-Code”ish Approach for Using Obsidian & AI To Process Your Notes the Way You Want
2024-06-20Discipline Absorbs Chaos. Try This Game-Changing & Simple Way to Manage Your Time.
2024-05-26The Most Useful iOS Shortcut for Obsidian (and Beyond!) Revisited
2024-05-08Your Obsidian Workflow is Missing a Physical Notebook
2024-04-22Bullet Journals and Obsidian
2024-04-07It Was Love At First Sight with This Obsidian Plugin
2024-02-26How to Create a Simple Personal Finance Dashboard in Obsidian
2024-02-17Satisfy the Beast. Science the Sh-t Out of Difficult Tasks and Habits
2024-01-05The Power of Obsidian for Personal Finance Accounting
2023-12-16Capture To Do. How I Manage Literally All My Tasks in Obsidian
2023-09-10Powerful Task Creation with Siri and Fantastical
2022-07-23The Most Useful iOS Shortcut for Obsidian
2022-07-13How To Use Obsidian as Your Companion for Ultimate Creativity
2022-06-12This Habit Forming Tip Helped Me Actually Make Habits Stick
2022-06-02I Spent $50 On These Obsidian Plugins
2022-05-24The Apple Home Theater
2022-05-22How to Surface The Most Useful Reading Highlights in Obsidian
2022-05-20Organize Your Notes, Projects and Tasks by Area of Responsibility
2022-05-17The 5 Reasons I Switched from Notion to Obsidian
2022-05-16This Is How to Have Your Books and Articles Read to You for Free (iOS)
2022-05-15This Simple Journaling Method Could Change Your Life
2016-12-02Reflections on AWS re:Invent 2016
2016-12-01‘Editor-First’ vs. ‘Terminal-First’ for Development
2014-11-11Old Wordpress Blog

Academic

Patro, Rob; Duggal, G; Love, MI; Irizarry, RA; Kingsford, C; Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference Nature Methods 14 417 2017 (pdf)
Sefer, Emre; Duggal, Geet; Kingsford, Carl; Deconvolution of ensemble chromatin interaction data reveals the latent mixing structures in cell subpopulations Journal of Computational Biology 23 6 425-438 2016 Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA (pdf)
Filippova, Darya *; Patro, Rob *; Duggal, Geet *; Kingsford, Carl; Identification of alternative topological domains in chromatin Algorithms for Molecular Biology 9 1-11 2014 BioMed Central (pdf)
Wang, Hao; Duggal, Geet; Patro, Rob; Girvan, Michelle; Hannenhalli, Sridhar; Kingsford, Carl; Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics 306-315 2013 (pdf)
Duggal, Geet; Wang, Hao; Kingsford, Carl; Higher-order chromatin domains link eQTLs with the expression of far-away genes Nucleic acids research 42 1 87-96 2014 Oxford University Press (pdf)
Filippova, Darya; Duggal, Geet; Patro, Rob; Kingsford, Carl; Chromovis: Feature-rich layouts of chromosome conformation graphs Unpublished manuscript at http://www. cs. cmu. edu/~ dfilippo/projects/chromovis/chromovisGD2013. pdf (last accessed 9/21/2017) 15 2013 (pdf)
Duggal, Geet; Patro, Rob; Sefer, Emre; Wang, Hao; Filippova, Darya; Khuller, Samir; Kingsford, Carl; Resolving spatial inconsistencies in chromosome conformation measurements Algorithms for Molecular Biology 8 1-10 2013 BioMed Central (pdf)
Duggal, Geet; Kingsford, Carl; Graph rigidity reveals well-constrained regions of chromosome conformation embeddings BMC bioinformatics 13 1-13 2012 BioMed Central (pdf)
Patro, Robert *; Duggal, Geet *; Sefer, Emre; Wang, Hao; Filippova, Darya; Kingsford, Carl; The missing models: A data-driven approach for learning how networks grow Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining 42-50 2012 (pdf)
Ku, Wai Lim; Duggal, Geet; Li, Yuan; Girvan, Michelle; Ott, Edward; Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs PloS one 7 2 e31969 2012 Public Library of Science San Francisco, USA (pdf)
Duggal, Geet *; Navlakha, Saket *; Girvan, Michelle; Kingsford, Carl; Uncovering many views of biological networks using ensembles of near-optimal partitions Proceedings of the 1st International Workshop on Discovering, Summarizing and Using Multiple Clusterings (KDD MultiClust) 9 9 2010 Washington DC (pdf)

* indicates equal contribution. Profile on Google Scholar.

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